Getting started

Monitoring GrapheneDB instance

Overview

GrapheneDB offers an endpoint for utilizing the open-source monitoring solution Prometheus. This endpoint enables you to oversee the underlying server of your deployment. By utilizing the metrics offered (such as CPU usage, memory utilization, and disk activity), you can gather insights into how the system’s load impacts the available resources.

Prometheus enables you to establish visual representations of metrics through charts, set up notification triggers, and more. Additionally, it facilitates integration with other tools like Grafana, along with services such as Datadog.

This article covers a basic setup of Prometheus, Grafana and Datadog, along with some example dashboards.

What is my Prometheus endpoint?

In the Insights Settings tab of Insighst area, we offer an endpoint for utilizing the open-source monitoring solution Prometheus.

To locate this endpoint, please navigate to the Insights Settings > Metrics section.

insights-settings

If you’d like to check if it is showing the metrics properly in the text format, you can just paste it into your regular browser URL and hit ENTER, and you should be able to access those metrics.

⚠️ Important

You’ll need to whitelist your IP or adding access to all IPs by adding 0.0.0.0/0 to the whitelist rule, to be able to access the endpoint, since the Environment access is disabled by default.

Installing Prometheus

Download the latest release of Prometheus for your platform, then extract and run it, and complete the needed setup. You can find details on this in official Prometheus documentation.

Metrics reference

The available metrics are described in the following tables.

JVM metrics

JVM metric Description
jvm_memory_bytes_max Max (bytes) of a given JVM memory area.
jvm_memory_bytes_init Initial bytes of a given JVM memory area
jvm_memory_bytes_used Used bytes of a given JVM memory area
jvm_memory_pool_bytes_used Used bytes of a given JVM memory pool
jvm_gc_collection_seconds Time spent in a given JVM garbage collector in seconds
jvm_threads_current Current thread count of a JVM
process_open_fds Number of open file descriptors
jvm_classes_loaded_total The total number of classes that have been loaded since the JVM has started execution

Station metrics

Station metric Description
station_cache_bytes Current cache usage in bytes
station_cpu_load_average_delta CPU load percent in the last ‘delta’ (1s)
station_cpu_usage_seconds_total Cumulative cpu time consumed in seconds.
station_last_seen Last time a station was seen by the exporter
station_memory_failures_total Cumulative count of memory allocation failures
station_memory_usage_bytes Current memory usage in bytes, including all memory regardless of when it was accessed
station_network_receive_bytes_total Cumulative count of bytes received
station_network_transmit_bytes_total Cumulative count of bytes transmitted
station_scrape_error 1 if there was an error while getting station metrics, 0 otherwise
station_spec_cpu_period_us CPU period of the station
station_spec_cpu_quota_us CPU quota of the station
station_spec_cpu_shares CPU shares of the station
station_spec_memory_limit_bytes Memory limit for the station
station_spec_memory_soft_limit_bytes Memory soft limit for the station
station_uptime_seconds Station uptime in seconds

Storage metrics

Storage metric Description
database_data_folder_size Total databases size in bytes (includes system db)
database_plugins_folder_size Plugins size in bytes
database_device_size Total EBS size in bytes
database_device_used_size Total size in bytes used by Neo4j
database_errors Errors
database_gc_stoptheworld_events_total Total number of “Stop-the-World” events that occur during garbage collection (GC) in a database system
database_gc_stoptheworld_pausetime_millis_total Measures the total accumulated time, in milliseconds, that the database has spent in “Stop-the-World” pauses during garbage collection (GC)

OOM metrics

OOM metric Description
database_oom_by_kind_count Count of database OOM’s by kind
database_oom_count Count of database OOM’s

Configure with Grafana

Here’s a step-by-step guide for configuring Grafana to visualize some of the key metrics from your GrapheneDB instance. This example will focus on setting up a dashboard with a few basic yet informative metrics.

Configure Prometheus for scraping GDB metrics

You first need to open the Prometheus configuration file (/etc/prometheus/prometheus.yml) in a text editor:

sudo nano /etc/prometheus/prometheus.yml

Now, add a new job for scraping your GrapheneDB metrics. Please make sure to replace YOUR_PROMETHEUS_ENDPOINT_FROM_GRAPHENEDB with the actual Prometheus endpoint section in GDB Console. Please exclude /metrics from URL, because you are already specifying metrics path as /metrics. Your file should look like this:

---
global:
  scrape_interval: 15s

scrape_configs:
  - job_name: 'prometheus'
    static_configs:
      - targets: ['localhost:9090']

  - job_name: 'graphenedb'
    scheme: https
    metrics_path: /metrics
    static_configs:
      - targets: ['YOUR_PROMETHEUS_ENDPOINT_FROM_GRAPHENEDB']

Save the changes and exit the text editor. Restart Prometheus to apply the new configuration:

sudo systemctl restart prometheus

And check the status, that should show as Active:

sudo systemctl status prometheus

You can now verify in Prometheus directly by opening http://localhost:9090/ > Status > Targets > All. You should be able to see your GrapheneDB Prometheus endpoint listed there.

prometheus-status

Add a Prometheus data source in Grafana

Start by logging in to your Grafana instance. Once logged in, go to Home > Connections > Data sources > Add data source > choose Prometheus from the list.

Next, configure your Prometheus connection by pasting the URL to your Prometheus instance, e.g., http://localhost:9090, in the Prometheus server URL field. Click on Save and Test button.
You should be able to see Successfully queried the Prometheus API. message.

Create a dashboard

Now, to start creating Dashboard, navigate to the Dashboards from sidemenu in Grafana, and click on Add Visualization button. Next, Select Prometheus from dropdown.

dashboard-data

You can now choose which metrics from available ones you would like to add to queries for the Dashboard. The list of available metrics can be found in previous setion here.
In this example below, we will setup a dashboard which shows the CPU usage over time, which helps you understand how much CPU is being used and whether there are any spikes or unusual patterns.

Start by clicking on Add query button and adding the following as metric: rate(station_cpu_usage_seconds_total[5m]). You should be able to see data populating into your Dashboard.

add-metric-query

In next example, we will visualize the network traffic in terms of bytes received and transmitted over time. We will use the following queries:

rate(station_network_receive_bytes_total[$__rate_interval])
rate(station_network_transmit_bytes_total[$__rate_interval])

Overlaying these two metrics allows us to compare inbound and outbound traffic directly, providing a clear view of network activity.

network-traffic

By following these steps, you can successfully set up Grafana to monitor your GrapheneDB instance. If you require any assistance or have any questions, feel free to Open a Support Case.

Configure with Datadog

Here’s a step-by-step guide on how to configure Datadog Agent. This example will focus on setting up a dashboard with a few basic yet informative metrics.

Installing Datadog

You can get official information on installation steps related to your operating system in the official Datadog docs.

Ensure that the API key you’re using has the correct permissions. You might need to add the Remote Configuration Read permission to the API key, and here’s how you can do it.

Log in to the Datadog web interface. Navigate to Integrations > API Keys > Check if Remote Config is enabled. If not, go to the Security > Remote Configuration and configure the agent for remote configuration enabling.

Please refer to the official Datadog docs for details intructions.

datadog-remote

Configure the OpenMetrics conf file

Configure the openmetrics.d/conf.yaml file to ensure it scrapes the necessary metrics.

Open the configuration file:

sudo nano /etc/datadog-agent/conf.d/openmetrics.d/conf.yaml

Update the content to include the metrics you want to scrape. Replace YOUR_PROMETHEUS_ENDPOINT_FROM_GRAPHENEDB with your actual Prometheus endpoint from GrapheneDB. In the example below, the metrics we want to monitor are specified. You can get the Metrics reference easily, in this section here.

---
init_config:

instances:
  - openmetrics_endpoint: https://gdb-k7ssps6ge5xlqfn7mapy.graphenedb.com:24780/metrics
    namespace: 'graphenedb'
    metrics:
      - database_data_folder_size
      - database_device_used_size
      - database_device_size
      - database_oom_count
      - station_memory_usage_bytes
      - station_network_receive_bytes_total
      - station_network_transmit_bytes_total
      - station_last_seen
      # Add more explicit metrics if needed

After updating the configuration, restart the Datadog Agent to apply the changes:

sudo systemctl restart datadog-agent

Verify if the Datadog Agent is running correctly and scraping Prometheus metrics with:

sudo datadog-agent status

Explore metrics in Datadog

Once the Agent is running and scraping metrics, log in to your Datadog account and navigate to Metrics > Explorer to view the data from Prometheus.

datadog-metrics

In the Summary tab, you can search for the metrics you’ve configured, such as graphenedb.database_data_folder_size or graphenedb.database_device_used_size, to verify that they are present.

Create a dashboard

From the Datadog sidebar, click on Dashboards, then select New Dashboard.

new-dd-dashboard

Give your dashboard a name, such as “GrapheneDB Monitoring”, and click Create Dashboard.

name-dd-dashboard

In our example below, we will add few key storage metrics from our GrapheneDB Prometheus endpoint, such as database_data_folder_size and database_device_used_size. By monitoring the growth trends of these metrics, you assess how much of the disk space is occupied by the database relative to the total disk space used.

When searching for metrics, please make sure to include graphenedb. prefix, or what ever namespace you have given in your openmetrics conf file. Example would be graphenedb.database_data_folder_size, graphenedb.database_device_size etc.

Now, to create our dashboard info, navigate to the Widgets > Timeseries to visualize the metrics over time.

add-widget

Next, click on Add Query button > and either paste or search for the metric you want to visualize. To add a next one for this dashboard, simply click on Add Query button again and select different desired metric. After you are happy, you can click on Save button, to save your Dashboard.

save-dashboard

By following these steps, you can successfully set up Datadog to monitor your GrapheneDB instance using OpenMetrics. If you require any assistance or have any questions, feel free to Open a Support Case.

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